PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G178400.1.p
Common NameGLYMA_18G178400
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 358aa    MW: 42121.2 Da    PI: 5.2946
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G178400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR137.86.3e-1268139172
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek 72 
                          +fY+ Y +   Fs++ks+   + ++ge+ ++tfvCskeg+r+++  + ++++++ ++ tr+gCk  ++v+ ++
  Glyma.18G178400.1.p  68 QFYKWYERANDFSIQKSHALIN-KKGETLQQTFVCSKEGYRQDRGLSpQNRKHEYKNFTRCGCKVYIRVHVNE 139
                          6****************99988.6777*****************99866777778999999999999998874 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.5E-968139IPR004330FAR1 DNA binding domain
PfamPF105514.0E-13252307IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MCCWNEDGLD DNECFENNVL DDNELKDEED CDNEVLNDEG YHETILEDGV EYVVEINDAN  60
RLMINGYQFY KWYERANDFS IQKSHALINK KGETLQQTFV CSKEGYRQDR GLSPQNRKHE  120
YKNFTRCGCK VYIRVHVNEL TDRCGGHKHK LLNEQDCGLL SGHRKITAID AMQIENYRKV  180
VIRPPHIYAS LAQTSWGYNK VGYVRKDIYN YFARQGHEQS SDFNRALNYF HHLCSKDPMM  240
VVAYIVDDEN RLQHLFCVNH HNNTIVFATA LVTNETEETY MWLLEQFLKE MKGKHPSFII  300
TDGDLEIVEF DEKWNDMITR FGLEDNNWVI TLYERKQTWA TTYIKGIFFA CIRTVSQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2359151e-176AC235915.2 Glycine max clone GM_WBc0232C06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014626148.11e-146PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A0R0F1470.0A0A0R0F147_SOYBN; Uncharacterized protein
STRINGGLYMA18G38935.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3265734
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-21FAR1-related sequence 5